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Microbiome Analysis Service

Metagenomics

Formal metagenomics services for shotgun microbiome profiling, assembly and MAG recovery, amplicon microbiome analysis, and structured microbiome result delivery.

  • Shotgun taxonomic profiling
  • Assembly and MAG recovery
  • Amplicon microbiome analysis

Analytical Scope

Metagenomics services for microbial profiling, assembly, and microbiome interpretation

Our metagenomics service catalogue spans the core project types used in microbiome research, from read-level taxonomic profiling to assembly-led MAG recovery and amplicon marker studies.

Shotgun taxonomic profiling

Read-level classification and abundance estimation for short-read and long-read shotgun metagenomic data.

Assembly and MAG recovery

Assembly, binning, bin quality assessment, taxonomic assignment, and delivery of MAG-oriented result packages.

Amplicon microbiome analysis

Marker-gene microbiome workflows for ASV inference, taxonomic classification, and diversity-oriented reporting.

Service Portfolio

High-level metagenomics services currently offered

These modules summarise the main metagenomics services available for formal project delivery. The placeholder panel in each card is reserved for a future recorded service video.

Shotgun microbiome profiling

Taxonomic profiling and abundance analysis

Classification and abundance estimation for shotgun metagenomic reads, with optional host filtering and cross-tool result consolidation.

Primary inputs
Short-read or long-read shotgun FASTQ files
Delivery outputs
Taxonomic profiles, abundance tables, QC summaries, visual reports

Genome-resolved metagenomics

Metagenome assembly and MAG recovery

Assembly, binning, quality assessment, and taxonomic assignment for projects that need genome-resolved microbiome outputs.

Primary inputs
Shotgun FASTQ files with optional group or co-assembly metadata
Delivery outputs
Assemblies, bins, MAG quality reports, taxonomy summaries, delivery bundles

Targeted microbiome profiling

Amplicon and metabarcoding analysis

Amplicon workflows for 16S, ITS, 18S, CO1, and related marker studies, including ASV inference and diversity-ready outputs.

Primary inputs
Paired-end or single-end amplicon FASTQ files, primers, metadata
Delivery outputs
ASV tables, representative sequences, taxonomy, diversity summaries, reports

Functional interpretation

Functional screening handoff

Contig and MAG outputs can be prepared for downstream functional screening of resistance genes, biosynthetic potential, and other microbial features.

Primary inputs
Assemblies, contigs, MAGs, or annotation-ready FASTA files
Delivery outputs
Functional-screening inputs, annotation handoff packages, review-ready summaries
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End-to-end omics analysis, from raw data to biological insight.
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